Precomputed Datasets

We already provide a couple of precomputed datasets. These datasets can be locally stored and opened with JSpecies. Organisms can be added and further calculation started.

Information: Groups which contain many and large genomes, can take a while until loaded by JSpecies. Main reason is the parsing of ANIb results, because BLAST generates huge output files.

Browse Precomputed Bacterial Datasets


A , B , C , D , E , F , G , H , I , J , K , L , M , N , O , P , Q , R , S , T , U , V , W , X , Y , Z


[A]

Acidithiobacillus ferrooxidans

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus
  1. Acidithiobacillus ferrooxidans ATCC 23270
  2. Acidithiobacillus ferrooxidans ATCC 53993

Comments: No comments

Download : Acidithiobacillus_ferrooxidans.zip

Acinetobacter baumannii

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter
  1. Acinetobacter baumannii ATCC 17978
  2. Acinetobacter baumannii SDF
  3. Acinetobacter baumannii AB0057
  4. Acinetobacter baumannii AYE
  5. Acinetobacter baumannii ACICU
  6. Acinetobacter baumannii AB307-0294

Comments: No comments

Download : Acinetobacter_baumannii.zip

Actinobacillus pleuropneumoniae

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus
  1. Actinobacillus pleuropneumoniae L20
  2. Actinobacillus pleuropneumoniae serovar 7 str. AP76
  3. Actinobacillus pleuropneumoniae serovar 3 str. JL03

Comments: No comments

Download : Actinobacillus_pleuropneumoniae.zip

Afifella_454

Taxonomy:
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae
  1. Afifella marina strain DSM 2698T
  2. Afifella marina strain C3
  3. Rhodopseudomonas julia strain DSM 11549
  4. Rhodobium gokarnense strain DSM17935T

Comments:
  1. Rhodopseudomonas julia strain DSM 11549 is pendent to be reclassified to the genus Afifella.
  2. Contains only partial random genome sequences.
  3. Uses better parameters for short 454 sequences with MUMmer: -c30, -g125, -l10

Download : Afifella_454.zip

Anaeromyxobacter dehalogenans

Taxonomy:
Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Anaeromyxobacter
  1. Anaeromyxobacter dehalogenans 2CP-1
  2. Anaeromyxobacter dehalogenans 2CP-C

Comments: No comments

Download : Anaeromyxobacter_dehalogenans.zip

Anaplasma marginale

Taxonomy:
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma
  1. Anaplasma marginale str. St. Maries
  2. Anaplasma marginale str. Florida

Comments: No comments

Download : Anaplasma_marginale.zip

[B]

Bacillus anthracis

Taxonomy:
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group
  1. Bacillus anthracis str. Ames
  2. Bacillus anthracis str. Sterne
  3. Bacillus anthracis str. 'Ames Ancestor'
  4. Bacillus anthracis str. CDC 684

Comments: No comments

Download : Bacillus_anthracis.zip

Bacillus cereus

Taxonomy:
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group
  1. Bacillus cereus Q1
  2. Bacillus cereus B4264
  3. Bacillus cereus AH820
  4. Bacillus cereus G9842
  5. Bacillus cereus cytotoxis NVH391-98
  6. Bacillus cereus ATCC14579
  7. Bacillus cereus AH187
  8. Bacillus cereus ZK
  9. Bacillus cereus ATCC10987
  10. Bacillus cereus 03BB102

Comments: No comments

Download : Bacillus_cereus.zip

Bacillus thuringiensis

Taxonomy:
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group
  1. Bacillus thuringiensis serovar konkukian str. 97-27
  2. Bacillus thuringiensis str. Al Hakam

Comments: No comments

Download : Bacillus_thuringiensis.zip

Bacteroides fragilis

Taxonomy:
Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
  1. Bacteroides fragilis YCH46
  2. Bacteroides fragilis NCTC 9343

Comments: No comments

Download : Bacteroides_fragilis.zip

Bifidobacterium animalis

Taxonomy:
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
  1. Bifidobacterium animalis subsp. lactis AD011
  2. Bifidobacterium animalis subsp. lactis Bl-04
  3. Bifidobacterium animalis subsp. lactis DSM 10140

Comments: No comments

Download : Bifidobacterium_animalis.zip

Bifidobacterium longum

Taxonomy:
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
  1. Bifidobacterium longum DJO10A
  2. Bifidobacterium longum subsp. infantis ATCC 15697
  3. Bifidobacterium longum NCC2705

Comments: No comments

Download : Bifidobacterium_longum.zip

Buchnera

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae
  1. Buchnera aphidicola
  2. Buchnera aphidicola Tuc7 (Acyrthosiphon pisum)
  3. Buchnera sp
  4. Buchnera aphidicola 5A (Acyrthosiphon pisum)
  5. Buchnera aphidicola Sg (Schizaphis graminum)
  6. Buchnera aphidicola Cc (Cinara cedri)

Comments: No comments

Download : Buchnera.zip

Burkholderia cenocepacia

Taxonomy:
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
  1. Burkholderia cenocepacia AU 1054
  2. Burkholderia cenocepacia HI2424
  3. Burkholderia cenocepacia J2315
  4. Burkholderia cenocepacia MC0-3

Comments: No comments

Download : Burkholderia_cenocepacia.zip

Borrelia burgdorferi

Taxonomy:
Bacteria; Spirochaetes; Spirochaetes (class); Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group
  1. Borrelia burgdorferi B31
  2. Borrelia burgdorferi ZS7

Comments: No comments

Download : Borrelia_burgdorferi.zip

[C]

Campylobacter jejuni

Taxonomy:
Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter
  1. Campylobacter jejuni RM1221
  2. Campylobacter jejuni subsp. jejuni 81116
  3. Campylobacter jejuni subsp. jejuni NCTC 11168
  4. Campylobacter jejuni subsp. doylei 269.97
  5. Campylobacter jejuni subsp. jejuni 81-176

Comments: No comments

Download : Campylobacter_jejuni.zip

[D]

Desulfovibrio vulgaris

Taxonomy:
Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio
  1. Desulfovibrio vulgaris DP4
  2. Desulfovibrio vulgaris str. 'Miyazaki F'
  3. Desulfovibrio vulgaris str. Hildenborough

Comments: No comments

Download : Desulfovibrio_vulgaris.zip

[E]

Ehrlichia ruminantium

Taxonomy:
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group
  1. Ehrlichia ruminantium str. Welgevonden
  2. Ehrlichia ruminantium str. Gardel
  3. Ehrlichia ruminantium str. Welgevonden

Comments: No comments

Download : Ehrlichia_ruminantium.zip

[F]

Francisella tularensis

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
  1. Francisella tularensis subsp. holarctica
  2. Francisella tularensis subsp. mediasiatica FSC147
  3. Francisella tularensis subsp. holarctica OSU18
  4. Francisella tularensis subsp. tularensis FSC198
  5. Francisella tularensis subsp. tularensis SCHU S4
  6. Francisella tularensis subsp. holarctica FTNF002-00
  7. Francisella tularensis subsp. tularensis WY96-3418
  8. Francisella tularensis subsp. novicida

Comments: No comments

Download : Francisella_tularensis.zip

[G]

[H]

Haemophilus influenzae

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus
  1. Haemophilus influenzae 86-028NP
  2. Haemophilus influenzae PittEE
  3. Haemophilus influenzae PittGG
  4. Haemophilus influenzae Rd KW20

Comments: No comments

Download : Haemophilus_influenzae.zip

[I]

[J]

[K]

Klebsiella pneumoniae

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella
  1. Klebsiella pneumoniae 342
  2. Klebsiella pneumoniae NTUH-K2044
  3. Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Comments: No comments

Download : Klebsiella_pneumoniae.zip

[L]

Lactococcus lactis

Taxonomy:
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus
  1. Lactococcus lactis subsp. cremoris MG1363
  2. Lactococcus lactis subsp. cremoris SK11
  3. Lactococcus lactis subsp. lactis Il1403

Comments: No comments

Download : Lactococcus_lactis.zip

[M]

Methanococcus maripaludis

Taxonomy:
Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus
  1. Methanococcus maripaludis C5
  2. Methanococcus maripaludis C6
  3. Methanococcus maripaludis C7
  4. Methanococcus maripaludis S2

Comments: No comments

Download : Methanococcus_maripaludis.zip

Methylobacterium extorquens

Taxonomy:
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium; Methylobacterium
  1. Methylobacterium extorquens AM1
  2. Methylobacterium extorquens DM4
  3. Methylobacterium extorquens PA1

Comments: No comments

Download : Methylobacterium_extorquens.zip

Mycobacterium avium

Taxonomy:
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC)
  1. Mycobacterium avium 104
  2. Mycobacterium avium subsp. paratuberculosis K-10

Comments: No comments

Download : Mycobacterium_avium.zip

Mycobacterium bovis

Taxonomy:
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex
  1. Mycobacterium bovis BCG str. Tokyo 172
  2. Mycobacterium bovis BCG str. Pasteur 1173P2
  3. Mycobacterium bovis AF2122/97

Comments: No comments

Download : Mycobacterium_bovis.zip

Mycobacterium leprae

Taxonomy:
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium
  1. Mycobacterium leprae Br4923
  2. Mycobacterium leprae TN

Comments: No comments

Download : Mycobacterium_leprae.zip

Mycobacterium tuberculosis

Taxonomy:
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex
  1. Mycobacterium tuberculosis KZN 1435
  2. Mycobacterium tuberculosis H37Ra
  3. Mycobacterium tuberculosis H37Rv
  4. Mycobacterium tuberculosis CDC1551
  5. Mycobacterium tuberculosis F11

Comments: No comments

Download : Mycobacterium_tuberculosis.zip

[N]

Neisseria gonorrhoeae

Taxonomy:
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria
  1. Neisseria gonorrhoeae FA19
  2. Neisseria gonorrhoeae NCCP11945

    3. Comments: No comments

    Download : Neisseria_gonorrhoeae.zip

[O]

Orientia tsutsugamushi

Taxonomy:
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia
  1. Orientia tsutsugamushi str. Boryong
  2. Orientia tsutsugamushi str. Ikeda

    3. Comments: No comments

    Download : Orientia_tsutsugamushi.zip

[P]

Polynucleobacter necessarius

Taxonomy:
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter
  1. Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
  2. Polynucleobacter necessarius subsp. necessarius STIR1

    3. Comments: No comments

    Download : Polynucleobacter_necessarius.zip

[Q]

[R]

Rhodobacter sphaeroides

Taxonomy:
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter
  1. Rhodobacter sphaeroides 2.4.1
  2. Rhodobacter sphaeroides KD131
  3. Rhodobacter sphaeroides ATCC 17029
  4. Rhodobacter sphaeroides ATCC 17025

Comments: No comments

Download : Rhodobacter_sphaeroides.zip

[S]

Shewanella baltica

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella
  1. Shewanella baltica OS155
  2. Shewanella baltica OS185
  3. Shewanella baltica OS195
  4. Shewanella baltica OS223

    5. Comments: No comments

    Download : Shewanella_baltica.zip

Streptococcus thermophilus

Taxonomy:
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
  1. Streptococcus thermophilus CNRZ1066
  2. Streptococcus thermophilus LMD-9
  3. Streptococcus thermophilus LMG 18311

    4. Comments: No comments

    Download : Streptococcus_thermophilus.zip

Synechococcus

Taxonomy:
Bacteria; Cyanobacteria; Chroococcales
  1. Synechococcus sp. CC9311
  2. Synechococcus sp. CC9902
  3. Synechococcus sp. WH 7803
  4. Synechococcus sp. PCC 7002
  5. Synechococcus sp. RCC307
  6. Synechococcus sp. CC9605
  7. Synechococcus elongatus PCC 6301
  8. Synechococcus elongatus PCC 7942
  9. Synechococcus sp. WH 8102

    10. Comments: No comments

    Download : Synechococcus.zip

[T]

Thermus thermophilus

Taxonomy:
Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus
  1. Thermus thermophilus HB27
  2. Thermus thermophilus HB8

Comments: No comments

Download : Thermus_thermophilus.zip

Tropheryma whipplei

Taxonomy:
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Micrococcineae; unclassified Micrococcineae; Tropheryma
  1. Tropheryma whipplei TW08/27
  2. Tropheryma whipplei str. Twist

Comments: No comments

Download : Tropheryma_whipplei.zip

Treponema pallidum

Taxonomy:
Bacteria; Spirochaetes; Spirochaetes (class); Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum
  1. Treponema pallidum subsp. pallidum SS14
  2. Treponema pallidum subsp. pallidum str. Nichols

Comments: No comments

Download : Treponema_pallidum.zip

[U]

[V]

Vibrio 454

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae
  1. Vibrio aestuarianus strain LMG 7909T
  2. Vibrio cophthalmi strain A089T
  3. Vibrio scophthalmi strain A107

Comments: Contains only partial random genome sequences.

Download : Vibrio_454.zip

[W]

Wolbachia

Taxonomy:
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Wolbachieae
  1. Wolbachia endosymbiont of Drosophila melanogaster
  2. Wolbachia endosymbiont of Brugia malayi
  3. Wolbachia endosymbiont of Culex quinquefasciatus Pel
  4. Wolbachia wRi

Comments: No comments

Download : Wolbachia.zip

[X]

Xanthomonas campestris

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas
  1. Xanthomonas campestris pv. campestris str. 8004
  2. Xanthomonas campestris pv. campestris str. ATCC 33913
  3. Xanthomonas campestris pv. campestris str. B100
  4. Xanthomonas campestris pv. vasculorum NCPPB702

Comments: No comments

Download : Xanthomonas_campestris.zip

Xanthomonas oryzae

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas
  1. Xanthomonas oryzae pv. oryzae KACC10331
  2. Xanthomonas oryzae pv. oryzae PXO99A
  3. Xanthomonas oryzae pv. oryzae MAFF 311018

Comments: No comments

Download : Xanthomonas_oryzae.zip

Xyllella fastidiosa

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella
  1. Xyllella fastidiosa M23
  2. Xyllella fastidiosa M12
  3. Xyllella fastidiosa Temecula1
  4. Xyllella fastidiosa

Comments: No comments

Download : Xyllella_fastidiosa.zip

[Y]

Yersinia pestis

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia
  1. Yersinia pestis KIM
  2. Yersinia pestis Pestoides F
  3. Yersinia pestis C092
  4. Yersinia pestis Angola
  5. Yersinia pestis Nepal516
  6. Yersinia pestis Antiqua
  7. Yersinia pestis biovar Microtus str. 91001

Comments: No comments

Download : Yersinia_pestis.zip

Yersinia pseudotuberculosis

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia
  1. Yersinia pseudotuberculosis IP 31758
  2. Yersinia pseudotuberculosis IP 32953
  3. Yersinia pseudotuberculosis PB1/+
  4. Yersinia pseudotuberculosis YPIII

Comments: No comments

Download : Yersinia_pseudotuberculosis.zip

Vibrio cholerae

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
  1. Vibrio cholerae M66-2
  2. Vibrio cholerae O1 biovar El Tor str. N16961
  3. Vibrio cholerae O395

Comments: No comments

Download : Vibrio_cholerae.zip

Vibrio fischeri

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio
  1. Vibrio fischeri ES114
  2. Vibrio fischeri MJ11

Comments: No comments

Download : Vibrio_fischeri.zip

Vibrio vulnificus

Taxonomy:
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
  1. Vibrio vulnificus CMCP6
  2. Vibrio vulnificus YJ016

Comments: No comments

Download : Vibrio_vulnificus.zip

[Z]



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