When

What

Where

Dt 30th abr.

10:30 am

1:30 pm

Visita de escuelas ganadoras del certamen "Ocean Odyssey Challenge” del proyecto Ocean Night

Entrega de premios de los proyectos ganadores del certamen "Ocean Odyssey Challenge” del proyecto Ocean Night.

IMEDEA

Dj 2nd maig

10:00 am

11:00 am

Animal sentinels: revealing environmental context with animal movement data. Dr. Eldar Rakhimberdiev, Universidad de Amsterdam

Sala de seminarios IMEDEA

Dv 3rd maig

12:00 pm

1:00 pm

Internal Cycle of Seminars: Laura Gómez Consarnau «Bacteria thriving in the light: understanding the intricacies of microbial phototrophy in the surface ocean»

Abstract

Sunlight drives virtually all life on the Earth’s surface, with about 50% of primary productivity occurring in marine systems. Yet, this traditional view of phototrophy changed radically with the discovery of marine bacterial rhodopsins (i.e., proteorhodopsins; PR), over twenty years ago. PRs are simple light-driven proton pumps present in over 80% of surface bacterioplankton, which allow them to transform light into biochemical energy.

Combining culture-based physiology studies with (meta)-genomics, (meta)-transcriptomics, and environmental quantifications we are just starting to understand the role that PR-based photoheterotrophy plays in the ocean. In this presentation, I will discuss the knowns and unknowns of PR-phototrophy and what we are starting to learn from looking at its natural distributions in different oceanographic basins, ranging from extreme ultraoligotrophic regions to high productivity environments

Sala de seminarios IMEDEA

Dl 6th maig

TREC Sequencing Course Mallorca

Introductory course to Next Generation Sequencing tecniques organized within the Maria de Maeztu Programme in collaboration with EMBL.

Schedule

May 6th 2024 Monday

Wet lab lectures

*10:00 – 10:45*	*Session 1: Considerations for experimental design.* *(Laura Villacorta – Genecore EMBL)*
*10:45 – 11:30*	*Session 2: Sample isolation and preparation. Applications. (Laura Villacorta – Genecore EMBL)*
*11:30 – 12:00*	*Coffee break (on site)*
*12:00 – 12:45*	*Session 4: Short-read sequencing.* *(Laura Villacorta – Genecore EMBL)*
*12:45 – 13:30*	*Session 5: Long-read sequencing.* *(Laura Villacorta – Genecore EMBL)*
*13:30 – 14:30*	*Lunch break (free time)*
*14:30 – 15:15*	*Session 3: Making of Platynereis into a Model Organism.* *(Leslie Pan, Arendt’s lab, EMBL)* The Arendt group is interested in the evolution of central nervous system in bilateral animals. With sequencing technologies becoming more accessible, we have built extensive genomics resources that has allowed us to dive deeper into cell type evolution. Leslie will introduce different published and unpublished works from the group, and how we leveraged the different sequencing technologies. 1. Assembling the genome of a highly heterozygous worm 2. Single cell transcriptomes for cross species comparison 3. In field genotyping/sequencing for species identification
*15:15 – 16:15*	*Session 6: Wet lab consultations.* *(Laura Villacorta, Leslie Pan, Jonathan Landry)*

May 7th 2024 Tuesday

Dry lab lectures

10:00 – 11:30

Session 7: Sequencing data formats and data QC.

(Jonathan Landry – Genecore EMBL)

11:30 – 12:00

Coffee break (on site)

12:00 – 13:00

Session 8: Dry lab consultations

(Jonathan Landry - Genecore EMBL)

Sala de Seminarios, IMEDEA

Dl 6th maig

2:00 pm

4:00 pm

Curso Base Programacion

Sala reuniones 3

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