‘The All-Species Living Tree’ Project

A valuable resource particularly for microbial taxonomists

2021 Downloads

LTP_12_2021
LTP database in ARB format
LTP database in csv format
LTP_all tree in newick format
LTP_core tree in newick format
LTP_12_2021 Release Notes
LTP_12_2021 Supplementary tables
LTP database with aligned sequences in fasta format
LTP database local blast ncbi database format
LTP database in compressed fasta format
ARB guide to update the LTP taxonomy from previous releases
LTP_09_2021
LTP database in ARB format
LTP database in csv format
LTP_all tree in newick format
LTP_core tree in newick format
LTP_09_2021 Release Notes
LTP_09_2021 Supplementary tables
LTP database with aligned sequences in fasta format
LTP database local blast ncbi database format
LTP database in compressed fasta format
LTP_04_2021
LTP database in ARB format
LTP database in csv format
LTP_all tree in newick format
LTP_core tree in newick format
LTP_04_2021 Release Notes
LTP_04_2021 Supplementary tables
LTP database with aligned sequences in fasta format
LTP database local blast ncbi database format
LTP database in compressed fasta format

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    LTP Publications

    • Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K. H. Schleifer, W. Ludwig, F. O. Glöckner, and R. Rossello-Mora. 2008. The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241-250. doi:10.1016/j.syapm.2008.07.001

      Link

    • Yarza, P., W. Ludwig, J. Euzeby, R. Amann, K. H. Schleifer, F. O. Glöckner, and R. Rossello-Mora. 2010. Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291-299. doi:10.1016/j.syapm.2010.08.001

      Link

    • Munoz, R., P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, and R. Rosselló-Móra. 2011. Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol 34:169-170. doi:10.1016/j.syapm.2011.03.001

      Link

    • Ludwig, W., Viver, T., Westram, R., Gago, J.F., Bustos-Caparros, E., Knittel, K., Amann, R., Rossello-Mora, R. (2021) Release LTP_12_2020, featuring a new ARB alignment and improved 16S rRNA tree for prokaryotic type strains. Syst Appl Microbiol 40: 126218

      Link