‘The All-Species Living Tree’ Project

A valuable resource particularly for microbial taxonomists

2021 Downloads

LTP_09_2021
LTP database in ARB format LTP_09_2021.arb
LTP database in csv format LTP_09_2021.csv
LTP_all tree in newick format LTP_all_09_2021.ntree
LTP_core tree in newick format LTP_core_09_2021.ntree
LTP_09_2021 Release Notes LTP_09_2021_release_notes.pdf
LTP_09_2021 Supplementary tables LTP_09_2021_release_tables.xlsx
LTP database with aligned sequences in fasta format LTP_09_2021_aligned.fasta
LTP database local blast ncbi database format LTP_09_2021_blastdb.fasta
LTP database in compressed fasta format LTP_09_2021_compressed.fasta
LTP_04_2021
LTP database in ARB format LTP_04_2021.arb
LTP database in csv format LTP_04_2021.csv
LTP_all tree in newick format Tree_LTP_all_04_2021.ntree
LTP_core tree in newick format Tree_LTP_core_04_2021.ntree
LTP_04_2021 Release Notes LTP_04_2021_release_notes.odt
LTP_04_2021 Supplementary tables LTP_04_2021_release_tables.xlsx
LTP database with aligned sequences in fasta format LTP_04_2021_aligned.fasta
LTP database local blast ncbi database format LTP_04_2021_blastdb.fasta
LTP database in compressed fasta format LTP_04_2021_compressed.fasta

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    LTP Publications

    • Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K. H. Schleifer, W. Ludwig, F. O. Glöckner, and R. Rossello-Mora. 2008. The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241-250. doi:10.1016/j.syapm.2008.07.001

      Link

    • Yarza, P., W. Ludwig, J. Euzeby, R. Amann, K. H. Schleifer, F. O. Glöckner, and R. Rossello-Mora. 2010. Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291-299. doi:10.1016/j.syapm.2010.08.001

      Link

    • Munoz, R., P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, and R. Rosselló-Móra. 2011. Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol 34:169-170. doi:10.1016/j.syapm.2011.03.001

      Link

    • Ludwig, W., Viver, T., Westram, R., Gago, J.F., Bustos-Caparros, E., Knittel, K., Amann, R., Rossello-Mora, R. (2021) Release LTP_12_2020, featuring a new ARB alignment and improved 16S rRNA tree for prokaryotic type strains. Syst Appl Microbiol 40: 126218

      Link