LTP – 2022 – MMG

A valuable resource particularly for microbial taxonomists

2022 Downloads

LTP_06_2022
LTP database in ARB format	LTP_06_2022.arb
LTP database in csv format	LTP_06_2022.csv
LTP_all tree in newick format	Tree_LTP_all_06_2022.ntree
LTP_core tree in newick format	Tree_LTP_core_06_2022.ntree
LTP_06_2022 Release Notes	LTP_06_2022_release_notes.pdf
LTP_06_2022 Supplementary tables	LTP_06_2022_release_tables.xlsx
LTP database with aligned sequences in fasta format	LTP_06_2022_aligned.fasta
LTP database local blast ncbi database format	LTP_06_2022_blastdb.fasta
LTP database in compressed fasta format	LTP_06_2022_compressed.fasta
ARB guide to update the LTP taxonomy from previous releases	ARB_guide_taxonomy_update_06_2022.pdf

LTP_01_2022
LTP database in ARB format	LTP_01_2022.arb
LTP database in csv format	LTP_01_2022.csv
LTP_all tree in newick format	Tree_LTP_all_01_2022.ntree
LTP_core tree in newick format	Tree_LTP_core_01_2022.ntree
LTP_01_2022 Release Notes	LTP_01_2022_release_notes.pdf
LTP_01_2022 Supplementary tables	LTP_01_2022_release_tables.xlsx
LTP database with aligned sequences in fasta format	LTP_01_2022_aligned.fasta
LTP database local blast ncbi database format	LTP_01_2022_blastdb.fasta
LTP database in compressed fasta format	LTP_01_2022_compressed.fasta
ARB guide to update the LTP taxonomy from previous releases	ARB_guide_taxonomy_update_01_2022.pdf

Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K. H. Schleifer, W. Ludwig, F. O. Glöckner, and R. Rossello-Mora. 2008. The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241-250. doi:10.1016/j.syapm.2008.07.001

Link
Yarza, P., W. Ludwig, J. Euzeby, R. Amann, K. H. Schleifer, F. O. Glöckner, and R. Rossello-Mora. 2010. Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33:291-299. doi:10.1016/j.syapm.2010.08.001

Link
Munoz, R., P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, and R. Rosselló-Móra. 2011. Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol 34:169-170. doi:10.1016/j.syapm.2011.03.001

Link
Ludwig, W., Viver, T., Westram, R., Gago, J.F., Bustos-Caparros, E., Knittel, K., Amann, R., Rossello-Mora, R. (2021) Release LTP_12_2020, featuring a new ARB alignment and improved 16S rRNA tree for prokaryotic type strains. Syst Appl Microbiol 40: 126218

Link